Nextflow workflow report

[curious_gilbert]

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

No files match pattern `genome.fa..*` at path: /Users/agrimabhatt/seqinspector/result/bwamem2_index/bwamem2/
Run times
14-Oct-2025 13:29:12 - 14-Oct-2025 13:29:20 (duration: 8.3s)
  0 succeeded  
  0 cached  
  0 ignored  
  0 failed (0 retries)  
Nextflow command
nextflow run main.nf -profile test,docker --input /Users/agrimabhatt/pipeline/testdata/testdata/Miseq_PairedEnd/samplesheet.csv --outdir result_test --bwa_index /Users/agrimabhatt/seqinspector/result/bwamem2_index/bwamem2/genome.fa. -with-report
CPU-Hours
(a few seconds)
Launch directory
/Users/agrimabhatt/seqinspector
Work directory
/Users/agrimabhatt/seqinspector/work
Project directory
/Users/agrimabhatt/seqinspector
Script name
main.nf
Script ID
51ae67c7a1786a7937e7c520871990bd
Workflow session
7bbc0367-0306-45df-8da0-16c26cb814b0
Workflow profile
test,docker
Nextflow version
version 25.04.7, build 5955 (08-09-2025 13:29 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)